Peer-reviewed (* graduate, ** undergraduate coauthors)
2022
Sweet, J*, S Bargu, M Parsons, MG Pathare*, B Roberts, T Sonniat, W Morrison, BA Stauffer. Trends in phytoplankton dynamics in Louisiana estuaries: building a baseline to understand current and future change. Marine Pollution Bulletin, 175: 113344, part of Virtual Special Issue: Plankton in the Gulf of Mexico: Ecological Considerations and the Macondo Oil Spill
Patrick, CJ, JS Kominoski, WH McDowell, B Branoff, D Lagomasino, M Leon, E Hensel, MJS Hensel, BA Strickland, TM Aide, A Armitage, M Campos-Cerqueira, VM Congdon, TA Crowl, DJ Devlin, S Douglas, BE Erisman, RA Feagin, SJ Geist, NS Hall, AK Hardison, MR Heithaus, JA Hogan, JD Hogan, S Kinard, JJ Kiszka, T-C Lin, K Lu, CJ Madden, PA Montagna, CS O'Connell, CE Proffitt, BK Reese, JW Reustle, KL Robinson, SA Rush, RO Santos, A Schnetzer, DL Smee, RS Smith, G Starr, BA Stauffer, LM Walker, CA Weaver, MS Wetz, ER Whitman, SS Wilson, J Xue, X Zou. A universal pattern of trade-offs between ecosystem resistance and resilience to tropical cyclones. Science Advances, 8:eabl9155
2021
Kurtay, G*, HJ Prevost**, BA Stauffer. 2021. Pico- and nanoplankton communities on the continental shelf of the northwestern Gulf of Mexico in the aftermath of Hurricane Harvey. Limnology & Oceanography 66 (7):2779-2796
Babitch, JW*, JA Nelson, LA Deegan, H Sullivan, BA Stauffer. 2021. Resolving estuarine nitrogen use by phytoplankton communities in Plum Island estuary using a whole ecosystem tracer approach. Estuaries and Coasts 44:1883–1898
2020
Hogan, JA, RA Faegin, G Starr, M Ross, T-C Lin, C O’Connell, T Huff, BA Stauffer, KL Robinson, MC Lara, J Xue, B Kiel Reese, SJ Geist, ER Whitman, S Douglas, VM Congdon, JW Reustle, RS Smith, D Lagomasino, BA Strickland, SS Wilson, CE Proffitt, JD Hogan, BL Branoff, AR Armitage, SA Rush, RO Santos, M Campos-Cerqueira, PA Montagna, B Erisman, L Walker, WL Silver, TA Crowl, M Wetz, N Hall, X Zou, SC Pennings, L-J Wang, C-T Chang, M Leon, WH McDowell, JS Kominoski, CJ Patrick. (2020) A research framework to integrate cross-ecosystem responses to tropical cyclones. BioScience 70(6): 477–489
Stauffer, BA, GS Sukhatme, DA Caron. (2020) Physical and biogeochemical factors driving spatially heterogeneous phytoplankton blooms in nearshore waters of Santa Monica Bay, USA. Estuaries and Coasts 43: 909–926
2019
Stauffer, BA, HA Bowers, E Buckley, TW Davis, TH Johengen, R Kudela, MA Mcmanus, H Purcell, GJ Smith, A Vander Woude, MN Tamburri. (2019) Considerations in Harmful Algal Bloom Research and Monitoring: Perspectives From a Consensus-Building Workshop and Technology Testing. Frontiers in Marine Science 6: 399.
2017
Stauffer BA, AG Gellene, D Rico**, C Sur**, DA Caron. 2017. Grazing of the heterotrophic dinoflagellate Noctiluca scintillans on dinoflagellate and raphidophyte prey. Aquatic Microbial Ecology 80: 193-207. (link)
2016
Pellerin, BA, BA Stauffer, DA Young, DJ Sullivan, SB Bricker, MR Walbridge, GA Clyde, DM Shaw. 2016. Emerging Tools for Continuous Nutrient Monitoring Networks: Sensors Advancing Science and Water Resources Protection. Journal of the American Water Resources Association 52(4): 993-1008, Open Water Data Initiative Feature Collection
2010-2015
Stauffer, BA, J Miksis-Olds, JI Goes. 2015 Cold regime interannual variability of primary and secondary producer community composition in the southeastern Bering Sea. PLOS ONE 10(6): e0131246. (pdf)
Stauffer, BA, CJ Patrick, KL Robinson, H Peter. 2014. Temporal scales of drivers of community dynamics: from microbes to macrofauna across the salinity gradient. In: PF Kemp (Ed.) Eco-DAS X Symposium Proceedings, Waco, TX: Association for the Sciences of Limnology and Oceanography, 14-24 (pdf)
Stauffer, BA, JI Goes, HR Gomes, PJ Stabeno. 2014. Interannual variability of spring-time phytoplankton community composition in the western Gulf of Alaska and southeastern Bering Sea. Deep Sea Research II 109: 57-70. (pdf)
Stauffer, BA, A Schnetzer, AG Gellene, C Oberg, GS Sukhatme, DA Caron. 2013. Effects of an acute hypoxic event on microplankton community structure in a coastal harbor of Southern California. Estuaries and Coasts 36: 135-148. (pdf)
Stauffer, BA, AG Gellene, A Schnetzer, EL Seubert, C Oberg, GS Sukhatme, DA Caron. 2012. An oceanographic, meteorological and biological 'perfect storm' yields a massive fish kill. Marine Ecology Progress Series 468: 231-243. (pdf)
Golubchik, L, D Caron, A Das, A Dhariwal, R Govindan, D Kempe, C Oberg, A Sharma, B Stauffer, G Sukhatme, B Zhang. 2011. AMBROSia: An Overview and Recent Results. Journal of Algorithms & Computational Technology 5 (4): 583-600.
Pre-2010
Smith, RN, J Das, H Heidarsson, A A. de Menezes Pereira, F Arrichiello, I Cetinic, L Darjany, ME Garneau, MD Howard, C Oberg, M Ragan, E Seubert, B Stauffer, A Schnetzer, G Toro-Farmer, DA Caron, BH. Jones, GS Sukhatme. 2010. USC CINAPS Builds Bridges: Observing and Monitoring the Southern California Bight. IEEE Robotics and Automation Magazine 17 (1): 20-30. (pdf)
Ishikawa, F. N., BA Stauffer, DA Caron, C Zhou. 2009. Rapid and Label-Free Cell Detection by Metal-Cluster-Decorated Carbon Nanotube Biosensors. Biosensors and Bioelectronics. 24 (10): 2967-2972. (pdf)
Stauffer, BA, RA Schaffner, C Wazniak, DA Caron. 2008. An immunofluorescent flow cytometric technique for counting the brown tide alga, Aureococcus anophagefferens. Applied & Environmental Microbiology 74(22):6931-40. (pdf)
Caron, DA, BA Stauffer, SD Moorthi, A Singh, M Batalin, E Graham, M Hansen, WJ Kaiser, J Das, A Pereira, A Dhariwal, B Zhang, C Oberg, GS Sukhatme. 2008. Macro- to fine-scale spatial and temporal distributions and dynamics of phytoplankton and their environmental driving forces in a small subalpine lake in southern California, USA. Limnology and Oceanography 53: 2333-2349. (pdf)
Stauffer, BA, GS Sukhatme, C Oberg, B Zhang, A Dhariwal, A Requicha, DA Caron. 2008. Use of embedded networked sensors for the study of cyanobacterial bloom dynamics. In: Cyanobacterial Harmful Algal Blooms: State of the Science and Research Needs, HK Hudnell (ed.). Advances in Experimental Medicine and Biology 619: 176-177.
Singh, A, M Batalin, MJ Stealey, B Zhang, A Dhariwal, B Stauffer, S Moorthi, C Oberg, A Pereira, V Chen, Y Lam, D Caron, M Hansen, WJ Kaiser, G Sukhatme. 2007. Human Assisted Robotic Team Campaigns for Aquatic Monitoring. Journal of Field Robotics 24 (11-12): 969-989.
Sukhatme, GS, A Dhariwal, B Zhang, C Oberg, BA Stauffer, DA Caron. 2007. Design and Development of a Wireless Robotic Networked Aquatic Microbial Observing System. Environmental Engineering Science 24 (2): 205-215.
Schnetzer, A, PE Miller, RA Schaffner, BA Stauffer, BH Jones, SB Weisberg, PM DiGiacomo, WM Berelson, DA Caron. 2007. Blooms of Pseudo-nitzschia and domoic acid in the San Pedro Channel and Los Angeles harbor areas of the Southern California Bight, 2003–2004. Harmful Algae 6 (3): 372-387. (pdf)
D Caron, A Das, A Dhariwal, L Golubchik, R Govindan, D Kempe, C Oberg, A Sharma, B Stauffer, G Sukhatme, B Zhang. 2007. AMBROSia: An Autonomous Model-Based Reactive Observing System. Lecture Notes in Computer Science 4487: 995-1001.
Moorthi, SD, PD Countway, BA Stauffer, DA Caron. 2006. Use of quantitative real-time PCR to investigate the dynamics of the red tide dinoflagellate Lingulodinium polyedrum. Microbial Ecology 52 (1): 136-150. (pdf)
Golubchik, L, D Caron, A Das, A Dhariwal, R Govindan, D Kempe, C Oberg, A Sharma, B Stauffer, G Sukhatme, B Zhang. 2006. A generic multi-scale modeling framework for reactive observing systems: An overview. Computational Science – ICCS, Part 3, Proceedings Lecture Notes in Computer Science 3993: 514-521.
Lee, AS, M Mahapatro, DA Caron, AAG Requicha, BA Stauffer, ME Thompson, CW Zhou. 2006. Whole-cell sensing for a harmful bloom-forming microscopic alga by measuring antibody-antigen forces. IEEE Transactions on Nanobioscience 5 (3): 149-156. (pdf)
Other
2021
Envisioning the Future of eDNA Sampling and Sample Processing Workshop (Primary Authors: J Raabe, B Stauffer). 2021. Alliance for Coastal Technologies Virtual Workshop Report.
2020
Barbero, L, C Kelble, D Perrot, R Wanninkhof (Technical Contributors: A Schnetzer, B Stauffer). 2020. Southeast Atlantic and Gulf of Mexico Region Ocean Acidification Research Plan. National Oceanic and Atmospheric Administration.
2019
Barbero, L., Pierrot, D., Wanninkhof, R., Baringer, M., Hooper, J., Zhang, J. Z., Smith, R., Byrne, R., Langdon, C., Hernández-Ayón, M., Schnetzer, A., Stauffer, B., Herzka, S., Cano-Compairé, J., Hernández, F., Pech, D., Hu, C., English, D., Ondrusek, M., Olascoaga, J., and Derr, G.: Third Gulf of Mexico Ecosystems and Carbon Cycle (GOMECC-3) Cruise, https://doi.org/10.25923/y6m9-fy08, 2019.
2010-2015
Stauffer, BA. 2014. Technical Considerations in the Design and Execution of Sensor Journalism Campaigns. In F. Pitt (Ed.) Sensors and Journalism. New York, NY: Columbia Journalism School. (pdf)
Hansen, GA, S Sadro, M Baustian, BA Stauffer. 2014. Shifting career pathways of ecologists: Is it time to redefine the "alternative" career? ASLO Bulletin 23 (1): 2-5. (pdf)
Media Coverage
“Coastal research dead under Trump budget” KATC report, March 2017
“The Challenge: Track Nutrients in Water to Protect Health.” Kat Song. 2015. AAAS Science & Technology Policy Fellowship News.
“Innovating to Protect our Waterways.” Tamara Dickinson. 2014. White House Office of Science & Technology Policy Blog.
"Monitoring network offers rare insight into King Harbor fish kill." Jeff Gillies. 2013. Fondriest Environmental Monitor.
"Dead Redondo Beach fish are a scientist's treasure." Melissa Pamer. 2011. Daily Breeze.
"A Little Urban Harbor Reveals Big Mysteries." Charlotte Stevenson. 2011. USC SeaGrant Urban Mariner.
2022
Sweet, J*, S Bargu, M Parsons, MG Pathare*, B Roberts, T Sonniat, W Morrison, BA Stauffer. Trends in phytoplankton dynamics in Louisiana estuaries: building a baseline to understand current and future change. Marine Pollution Bulletin, 175: 113344, part of Virtual Special Issue: Plankton in the Gulf of Mexico: Ecological Considerations and the Macondo Oil Spill
Patrick, CJ, JS Kominoski, WH McDowell, B Branoff, D Lagomasino, M Leon, E Hensel, MJS Hensel, BA Strickland, TM Aide, A Armitage, M Campos-Cerqueira, VM Congdon, TA Crowl, DJ Devlin, S Douglas, BE Erisman, RA Feagin, SJ Geist, NS Hall, AK Hardison, MR Heithaus, JA Hogan, JD Hogan, S Kinard, JJ Kiszka, T-C Lin, K Lu, CJ Madden, PA Montagna, CS O'Connell, CE Proffitt, BK Reese, JW Reustle, KL Robinson, SA Rush, RO Santos, A Schnetzer, DL Smee, RS Smith, G Starr, BA Stauffer, LM Walker, CA Weaver, MS Wetz, ER Whitman, SS Wilson, J Xue, X Zou. A universal pattern of trade-offs between ecosystem resistance and resilience to tropical cyclones. Science Advances, 8:eabl9155
2021
Kurtay, G*, HJ Prevost**, BA Stauffer. 2021. Pico- and nanoplankton communities on the continental shelf of the northwestern Gulf of Mexico in the aftermath of Hurricane Harvey. Limnology & Oceanography 66 (7):2779-2796
Babitch, JW*, JA Nelson, LA Deegan, H Sullivan, BA Stauffer. 2021. Resolving estuarine nitrogen use by phytoplankton communities in Plum Island estuary using a whole ecosystem tracer approach. Estuaries and Coasts 44:1883–1898
2020
Hogan, JA, RA Faegin, G Starr, M Ross, T-C Lin, C O’Connell, T Huff, BA Stauffer, KL Robinson, MC Lara, J Xue, B Kiel Reese, SJ Geist, ER Whitman, S Douglas, VM Congdon, JW Reustle, RS Smith, D Lagomasino, BA Strickland, SS Wilson, CE Proffitt, JD Hogan, BL Branoff, AR Armitage, SA Rush, RO Santos, M Campos-Cerqueira, PA Montagna, B Erisman, L Walker, WL Silver, TA Crowl, M Wetz, N Hall, X Zou, SC Pennings, L-J Wang, C-T Chang, M Leon, WH McDowell, JS Kominoski, CJ Patrick. (2020) A research framework to integrate cross-ecosystem responses to tropical cyclones. BioScience 70(6): 477–489
Stauffer, BA, GS Sukhatme, DA Caron. (2020) Physical and biogeochemical factors driving spatially heterogeneous phytoplankton blooms in nearshore waters of Santa Monica Bay, USA. Estuaries and Coasts 43: 909–926
2019
Stauffer, BA, HA Bowers, E Buckley, TW Davis, TH Johengen, R Kudela, MA Mcmanus, H Purcell, GJ Smith, A Vander Woude, MN Tamburri. (2019) Considerations in Harmful Algal Bloom Research and Monitoring: Perspectives From a Consensus-Building Workshop and Technology Testing. Frontiers in Marine Science 6: 399.
2017
Stauffer BA, AG Gellene, D Rico**, C Sur**, DA Caron. 2017. Grazing of the heterotrophic dinoflagellate Noctiluca scintillans on dinoflagellate and raphidophyte prey. Aquatic Microbial Ecology 80: 193-207. (link)
2016
Pellerin, BA, BA Stauffer, DA Young, DJ Sullivan, SB Bricker, MR Walbridge, GA Clyde, DM Shaw. 2016. Emerging Tools for Continuous Nutrient Monitoring Networks: Sensors Advancing Science and Water Resources Protection. Journal of the American Water Resources Association 52(4): 993-1008, Open Water Data Initiative Feature Collection
2010-2015
Stauffer, BA, J Miksis-Olds, JI Goes. 2015 Cold regime interannual variability of primary and secondary producer community composition in the southeastern Bering Sea. PLOS ONE 10(6): e0131246. (pdf)
Stauffer, BA, CJ Patrick, KL Robinson, H Peter. 2014. Temporal scales of drivers of community dynamics: from microbes to macrofauna across the salinity gradient. In: PF Kemp (Ed.) Eco-DAS X Symposium Proceedings, Waco, TX: Association for the Sciences of Limnology and Oceanography, 14-24 (pdf)
Stauffer, BA, JI Goes, HR Gomes, PJ Stabeno. 2014. Interannual variability of spring-time phytoplankton community composition in the western Gulf of Alaska and southeastern Bering Sea. Deep Sea Research II 109: 57-70. (pdf)
Stauffer, BA, A Schnetzer, AG Gellene, C Oberg, GS Sukhatme, DA Caron. 2013. Effects of an acute hypoxic event on microplankton community structure in a coastal harbor of Southern California. Estuaries and Coasts 36: 135-148. (pdf)
Stauffer, BA, AG Gellene, A Schnetzer, EL Seubert, C Oberg, GS Sukhatme, DA Caron. 2012. An oceanographic, meteorological and biological 'perfect storm' yields a massive fish kill. Marine Ecology Progress Series 468: 231-243. (pdf)
Golubchik, L, D Caron, A Das, A Dhariwal, R Govindan, D Kempe, C Oberg, A Sharma, B Stauffer, G Sukhatme, B Zhang. 2011. AMBROSia: An Overview and Recent Results. Journal of Algorithms & Computational Technology 5 (4): 583-600.
Pre-2010
Smith, RN, J Das, H Heidarsson, A A. de Menezes Pereira, F Arrichiello, I Cetinic, L Darjany, ME Garneau, MD Howard, C Oberg, M Ragan, E Seubert, B Stauffer, A Schnetzer, G Toro-Farmer, DA Caron, BH. Jones, GS Sukhatme. 2010. USC CINAPS Builds Bridges: Observing and Monitoring the Southern California Bight. IEEE Robotics and Automation Magazine 17 (1): 20-30. (pdf)
Ishikawa, F. N., BA Stauffer, DA Caron, C Zhou. 2009. Rapid and Label-Free Cell Detection by Metal-Cluster-Decorated Carbon Nanotube Biosensors. Biosensors and Bioelectronics. 24 (10): 2967-2972. (pdf)
Stauffer, BA, RA Schaffner, C Wazniak, DA Caron. 2008. An immunofluorescent flow cytometric technique for counting the brown tide alga, Aureococcus anophagefferens. Applied & Environmental Microbiology 74(22):6931-40. (pdf)
Caron, DA, BA Stauffer, SD Moorthi, A Singh, M Batalin, E Graham, M Hansen, WJ Kaiser, J Das, A Pereira, A Dhariwal, B Zhang, C Oberg, GS Sukhatme. 2008. Macro- to fine-scale spatial and temporal distributions and dynamics of phytoplankton and their environmental driving forces in a small subalpine lake in southern California, USA. Limnology and Oceanography 53: 2333-2349. (pdf)
Stauffer, BA, GS Sukhatme, C Oberg, B Zhang, A Dhariwal, A Requicha, DA Caron. 2008. Use of embedded networked sensors for the study of cyanobacterial bloom dynamics. In: Cyanobacterial Harmful Algal Blooms: State of the Science and Research Needs, HK Hudnell (ed.). Advances in Experimental Medicine and Biology 619: 176-177.
Singh, A, M Batalin, MJ Stealey, B Zhang, A Dhariwal, B Stauffer, S Moorthi, C Oberg, A Pereira, V Chen, Y Lam, D Caron, M Hansen, WJ Kaiser, G Sukhatme. 2007. Human Assisted Robotic Team Campaigns for Aquatic Monitoring. Journal of Field Robotics 24 (11-12): 969-989.
Sukhatme, GS, A Dhariwal, B Zhang, C Oberg, BA Stauffer, DA Caron. 2007. Design and Development of a Wireless Robotic Networked Aquatic Microbial Observing System. Environmental Engineering Science 24 (2): 205-215.
Schnetzer, A, PE Miller, RA Schaffner, BA Stauffer, BH Jones, SB Weisberg, PM DiGiacomo, WM Berelson, DA Caron. 2007. Blooms of Pseudo-nitzschia and domoic acid in the San Pedro Channel and Los Angeles harbor areas of the Southern California Bight, 2003–2004. Harmful Algae 6 (3): 372-387. (pdf)
D Caron, A Das, A Dhariwal, L Golubchik, R Govindan, D Kempe, C Oberg, A Sharma, B Stauffer, G Sukhatme, B Zhang. 2007. AMBROSia: An Autonomous Model-Based Reactive Observing System. Lecture Notes in Computer Science 4487: 995-1001.
Moorthi, SD, PD Countway, BA Stauffer, DA Caron. 2006. Use of quantitative real-time PCR to investigate the dynamics of the red tide dinoflagellate Lingulodinium polyedrum. Microbial Ecology 52 (1): 136-150. (pdf)
Golubchik, L, D Caron, A Das, A Dhariwal, R Govindan, D Kempe, C Oberg, A Sharma, B Stauffer, G Sukhatme, B Zhang. 2006. A generic multi-scale modeling framework for reactive observing systems: An overview. Computational Science – ICCS, Part 3, Proceedings Lecture Notes in Computer Science 3993: 514-521.
Lee, AS, M Mahapatro, DA Caron, AAG Requicha, BA Stauffer, ME Thompson, CW Zhou. 2006. Whole-cell sensing for a harmful bloom-forming microscopic alga by measuring antibody-antigen forces. IEEE Transactions on Nanobioscience 5 (3): 149-156. (pdf)
Other
2021
Envisioning the Future of eDNA Sampling and Sample Processing Workshop (Primary Authors: J Raabe, B Stauffer). 2021. Alliance for Coastal Technologies Virtual Workshop Report.
2020
Barbero, L, C Kelble, D Perrot, R Wanninkhof (Technical Contributors: A Schnetzer, B Stauffer). 2020. Southeast Atlantic and Gulf of Mexico Region Ocean Acidification Research Plan. National Oceanic and Atmospheric Administration.
2019
Barbero, L., Pierrot, D., Wanninkhof, R., Baringer, M., Hooper, J., Zhang, J. Z., Smith, R., Byrne, R., Langdon, C., Hernández-Ayón, M., Schnetzer, A., Stauffer, B., Herzka, S., Cano-Compairé, J., Hernández, F., Pech, D., Hu, C., English, D., Ondrusek, M., Olascoaga, J., and Derr, G.: Third Gulf of Mexico Ecosystems and Carbon Cycle (GOMECC-3) Cruise, https://doi.org/10.25923/y6m9-fy08, 2019.
2010-2015
Stauffer, BA. 2014. Technical Considerations in the Design and Execution of Sensor Journalism Campaigns. In F. Pitt (Ed.) Sensors and Journalism. New York, NY: Columbia Journalism School. (pdf)
Hansen, GA, S Sadro, M Baustian, BA Stauffer. 2014. Shifting career pathways of ecologists: Is it time to redefine the "alternative" career? ASLO Bulletin 23 (1): 2-5. (pdf)
Media Coverage
“Coastal research dead under Trump budget” KATC report, March 2017
“The Challenge: Track Nutrients in Water to Protect Health.” Kat Song. 2015. AAAS Science & Technology Policy Fellowship News.
“Innovating to Protect our Waterways.” Tamara Dickinson. 2014. White House Office of Science & Technology Policy Blog.
"Monitoring network offers rare insight into King Harbor fish kill." Jeff Gillies. 2013. Fondriest Environmental Monitor.
"Dead Redondo Beach fish are a scientist's treasure." Melissa Pamer. 2011. Daily Breeze.
"A Little Urban Harbor Reveals Big Mysteries." Charlotte Stevenson. 2011. USC SeaGrant Urban Mariner.
